Protein name:
HLA class II histocompatibility antigen, DRB1-9 beta chain;
Alternative:
MHC class II antigen DRB1*9(DR-9;DR9);
Organism:
HLA-DRB1-9 (Homo sapiens).
General Annotation
Sub Unit:
Heterodimer of an alpha and a beta subunit; also referred as MHC class II molecule. In the endoplasmic reticulum (ER) it forms an heterononamer; 3 MHC class II molecules bind to a CD74 homotrimer (also known as invariant chain or HLA class II histocompatibility antigen gamma chain). In the endosomal/lysosomal system; CD74 undergoes sequential degradation by various proteases; leaving a small fragment termed CLIP on each MHC class II molecule. MHC class II molecule interacts with HLA_DM, and HLA_DO in B cells, in order to release CLIP and facilitate the binding of antigenic peptides.
Function:
Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) and presents them on the cell surface for recognition by the CD4 T-cells. The peptide binding cleft accomodates peptides of 10-30 residues. The peptides presented by MHC class II molecules are generated mostly by degradation of proteins that access the endocytic route; where they are processed by lysosomal proteases and other hydrolases. Exogenous antigens that have been endocytosed by the APC are thus readily available for presentation via MHC II molecules; and for this reason this antigen presentation pathway is usually referred to as exogenous. As membrane proteins on their way to degradation in lysosomes as part of their normal turn-over are also contained in the endosomal/lysosomal compartments; exogenous antigens must compete with those derived from endogenous components. Autophagy is also a source of endogenous peptides; autophagosomes constitutively fuse with MHC class II loading compartments. In addition to APCs; other cells of the gastrointestinal tract; such as epithelial cells; express MHC class II molecules and CD74 and act as APCs; which is an unusual trait of the GI tract. To produce a MHC class II molecule that presents an antigen; three MHC class II molecules (heterodimers of an alpha and a beta chain) associate with a CD74 trimer in the ER to form an heterononamer. Soon after the entry of this complex into the endosomal/lysosomal system where antigen processing occurs; CD74 undergoes a sequential degradation by various proteases; including CTSS and CTSL; leaving a small fragment termed CLIP (class-II-associated invariant chain peptide). The removal of CLIP is facilitated by HLA-DM via direct binding to the alpha-beta-CLIP complex so that CLIP is released. HLA-DM stabilizes MHC class II molecules until primary high affinity antigenic peptides are bound. The MHC II molecule bound to a peptide is then transported to the cell membrane surface. In B cells; the interaction between HLA-DM and MHC class II molecules is regulated by HLA-DO. Primary dendritic cells (DCs) also to express HLA-DO. Lysosomal miroenvironment has been implicated in the regulation of antigen loading into MHC II molecules; increased acidification produces increased proteolysis and efficient peptide loading.
Subcellular Location:
Cell membrane
Single-pass type I membrane protein
Endoplasmic reticulum membrane
Single-pass type I membrane protein
Golgi apparatus
trans-Golgi network membrane
Single-pass type I membrane protein
Endosome membrane
Single-pass type I membrane protein
Lysosome membrane
Single-pass type I membrane protein
Late endosome membrane
Single-pass type I membrane protein
The MHC class II complex transits through a number of intracellular compartments in the endocytic pathway until it reaches the cell membrane for antigen presentation.
Protein Attributes:
50:
MVCLKLPGGS | CMAALTVTLM | VLSSPLALAG | DTQPRFLKQD | KFECHFFNGT |
100:
ERVRYLHRGI | YNQEENVRFD | SDVGEYRAVT | ELGRPVAESW | NSQKDFLERR |
150:
RAEVDTVCRH | NYGVGESFTV | QRRVHPEVTV | YPAKTQPLQH | HNLLVCSVSG |
200:
FYPGSIEVRW | FRNGQEEKAG | VVSTGLIQNG | DWTFQTLVML | ETVPRSGEVY |
250:
TCQVEHPSVM | SPLTVEWRAR | SESAQSKMLS | GVGGFVLGLL | FLGAGLFIYF |

Vaild Sequence:
Related Databases
Uniprot: