"Human autophagins, a family of cysteine proteinases potentially implicated in cell degradation by autophagy."
Marino G. , Uria J.A. , Puente X.S. , Quesada V. , Bordallo J. , Lopez-Otin C.
J. Biol. Chem.278:3671-3678(2003) [PubMed] [Europe PMC] [Abstract]

"LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation."
Kabeya Y. , Mizushima N. , Yamamoto A. , Oshitani-Okamoto S. , Ohsumi Y. , Yoshimori T.
J. Cell Sci.117:2805-2812(2004) [PubMed] [Europe PMC] [Abstract]

"Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro."
Nagase T. , Ishikawa K. , Suyama M. , Kikuno R. , Hirosawa M. , Miyajima N. , Tanaka A. , Kotani H. , Nomura N. , Ohara O.
DNA Res.6:63-70(1999) [PubMed] [Europe PMC] [Abstract]

Ohara O. , Nagase T. , Kikuno R.
Submitted (2005-08) to the EMBL/GenBank/DDBJ databases

"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T. , Suzuki Y. , Nishikawa T. , Otsuki T. , Sugiyama T. , Irie R. , Wakamatsu A. , Hayashi K. , Sato H. , Nagai K. , Kimura K. , Makita H. , Sekine M. , Obayashi M. , Nishi T. , Shibahara T. , Tanaka T. , Ishii S. , Yamamoto J. , Saito K. , Kawai Y. , Isono Y. , Nakamura Y. , Nagahari K. , Murakami K. , Yasuda T. , Iwayanagi T. , Wagatsuma M. , Shiratori A. , Sudo H. , Hosoiri T. , Kaku Y. , Kodaira H. , Kondo H. , Sugawara M. , Takahashi M. , Kanda K. , Yokoi T. , Furuya T. , Kikkawa E. , Omura Y. , Abe K. , Kamihara K. , Katsuta N. , Sato K. , Tanikawa M. , Yamazaki M. , Ninomiya K. , Ishibashi T. , Yamashita H. , Murakawa K. , Fujimori K. , Tanai H. , Kimata M. , Watanabe M. , Hiraoka S. , Chiba Y. , Ishida S. , Ono Y. , Takiguchi S. , Watanabe S. , Yosida M. , Hotuta T. , Kusano J. , Kanehori K. , Takahashi-Fujii A. , Hara H. , Tanase T.-O. , Nomura Y. , Togiya S. , Komai F. , Hara R. , Takeuchi K. , Arita M. , Imose N. , Musashino K. , Yuuki H. , Oshima A. , Sasaki N. , Aotsuka S. , Yoshikawa Y. , Matsunawa H. , Ichihara T. , Shiohata N. , Sano S. , Moriya S. , Momiyama H. , Satoh N. , Takami S. , Terashima Y. , Suzuki O. , Nakagawa S. , Senoh A. , Mizoguchi H. , Goto Y. , Shimizu F. , Wakebe H. , Hishigaki H. , Watanabe T. , Sugiyama A. , Takemoto M. , Kawakami B. , Yamazaki M. , Watanabe K. , Kumagai A. , Itakura S. , Fukuzumi Y. , Fujimori Y. , Komiyama M. , Tashiro H. , Tanigami A. , Fujiwara T. , Ono T. , Yamada K. , Fujii Y. , Ozaki K. , Hirao M. , Ohmori Y. , Kawabata A. , Hikiji T. , Kobatake N. , Inagaki H. , Ikema Y. , Okamoto S. , Okitani R. , Kawakami T. , Noguchi S. , Itoh T. , Shigeta K. , Senba T. , Matsumura K. , Nakajima Y. , Mizuno T. , Morinaga M. , Sasaki M. , Togashi T. , Oyama M. , Hata H. , Watanabe M. , Komatsu T. , Mizushima-Sugano J. , Satoh T. , Shirai Y. , Takahashi Y. , Nakagawa K. , Okumura K. , Nagase T. , Nomura N. , Kikuchi H. , Masuho Y. , Yamashita R. , Nakai K. , Yada T. , Nakamura Y. , Ohara O. , Isogai T. , Sugano S. more...
Nat. Genet.36:40-45(2004) [PubMed] [Europe PMC] [Abstract]

"The full-ORF clone resource of the German cDNA consortium."
Bechtel S. , Rosenfelder H. , Duda A. , Schmidt C.P. , Ernst U. , Wellenreuther R. , Mehrle A. , Schuster C. , Bahr A. , Bloecker H. , Heubner D. , Hoerlein A. , Michel G. , Wedler H. , Koehrer K. , Ottenwaelder B. , Poustka A. , Wiemann S. , Schupp I. more...
BMC Genomics8:399-399(2007) [PubMed] [Europe PMC] [Abstract]

"Generation and annotation of the DNA sequences of human chromosomes 2 and 4."
Hillier L.W. , Graves T.A. , Fulton R.S. , Fulton L.A. , Pepin K.H. , Minx P. , Wagner-McPherson C. , Layman D. , Wylie K. , Sekhon M. , Becker M.C. , Fewell G.A. , Delehaunty K.D. , Miner T.L. , Nash W.E. , Kremitzki C. , Oddy L. , Du H. , Sun H. , Bradshaw-Cordum H. , Ali J. , Carter J. , Cordes M. , Harris A. , Isak A. , van Brunt A. , Nguyen C. , Du F. , Courtney L. , Kalicki J. , Ozersky P. , Abbott S. , Armstrong J. , Belter E.A. , Caruso L. , Cedroni M. , Cotton M. , Davidson T. , Desai A. , Elliott G. , Erb T. , Fronick C. , Gaige T. , Haakenson W. , Haglund K. , Holmes A. , Harkins R. , Kim K. , Kruchowski S.S. , Strong C.M. , Grewal N. , Goyea E. , Hou S. , Levy A. , Martinka S. , Mead K. , McLellan M.D. , Meyer R. , Randall-Maher J. , Tomlinson C. , Dauphin-Kohlberg S. , Kozlowicz-Reilly A. , Shah N. , Swearengen-Shahid S. , Snider J. , Strong J.T. , Thompson J. , Yoakum M. , Leonard S. , Pearman C. , Trani L. , Radionenko M. , Waligorski J.E. , Wang C. , Rock S.M. , Tin-Wollam A.-M. , Maupin R. , Latreille P. , Wendl M.C. , Yang S.-P. , Pohl C. , Wallis J.W. , Spieth J. , Bieri T.A. , Berkowicz N. , Nelson J.O. , Osborne J. , Ding L. , Meyer R. , Sabo A. , Shotland Y. , Sinha P. , Wohldmann P.E. , Cook L.L. , Hickenbotham M.T. , Eldred J. , Williams D. , Jones T.A. , She X. , Ciccarelli F.D. , Izaurralde E. , Taylor J. , Schmutz J. , Myers R.M. , Cox D.R. , Huang X. , McPherson J.D. , Mardis E.R. , Clifton S.W. , Warren W.C. , Chinwalla A.T. , Eddy S.R. , Marra M.A. , Ovcharenko I. , Furey T.S. , Miller W. , Eichler E.E. , Bork P. , Suyama M. , Torrents D. , Waterston R.H. , Wilson R.K. more...
Nature434:724-731(2005) [PubMed] [Europe PMC] [Abstract]

"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res.14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]

Bienvenut W.V.
Submitted (2010-01) to the UniProtKB

"HsAtg4B/HsApg4B/autophagin-1 cleaves the carboxyl termini of three human Atg8 homologues and delipidates microtubule-associated protein light chain 3- and GABAA receptor-associated protein-phospholipid conjugates."
Tanida I. , Sou Y.-S. , Ezaki J. , Minematsu-Ikeguchi N. , Ueno T. , Kominami E.
J. Biol. Chem.279:36268-36276(2004) [PubMed] [Europe PMC] [Abstract]

"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks."
Olsen J.V. , Blagoev B. , Gnad F. , Macek B. , Kumar C. , Mortensen P. , Mann M.
Cell127:635-648(2006) [PubMed] [Europe PMC] [Abstract]

"Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4."
Scherz-Shouval R. , Shvets E. , Fass E. , Shorer H. , Gil L. , Elazar Z.
EMBO J.26:1749-1760(2007) [PubMed] [Europe PMC] [Abstract]

"Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
Gauci S. , Helbig A.O. , Slijper M. , Krijgsveld J. , Heck A.J. , Mohammed S.
Anal. Chem.81:4493-4501(2009) [PubMed] [Europe PMC] [Abstract]

"Large-scale proteomics analysis of the human kinome."
Oppermann F.S. , Gnad F. , Olsen J.V. , Hornberger R. , Greff Z. , Keri G. , Mann M. , Daub H.
Mol. Cell. Proteomics8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract]

"Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
Mayya V. , Lundgren D.H. , Hwang S.-I. , Rezaul K. , Wu L. , Eng J.K. , Rodionov V. , Han D.K.
Sci. Signal.2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract]

"Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis."
Olsen J.V. , Vermeulen M. , Santamaria A. , Kumar C. , Miller M.L. , Jensen L.J. , Gnad F. , Cox J. , Jensen T.S. , Nigg E.A. , Brunak S. , Mann M.
Sci. Signal.3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract]

"Initial characterization of the human central proteome."
Burkard T.R. , Planyavsky M. , Kaupe I. , Breitwieser F.P. , Buerckstuemmer T. , Bennett K.L. , Superti-Furga G. , Colinge J.
BMC Syst. Biol.5:17-17(2011) [PubMed] [Europe PMC] [Abstract]

"Kinetics comparisons of mammalian Atg4 homologues indicate selective preferences toward diverse Atg8 substrates."
Li M. , Hou Y. , Wang J. , Chen X. , Shao Z.M. , Yin X.M.
J. Biol. Chem.286:7327-7338(2011) [PubMed] [Europe PMC] [Abstract]

"System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
Rigbolt K.T. , Prokhorova T.A. , Akimov V. , Henningsen J. , Johansen P.T. , Kratchmarova I. , Kassem M. , Mann M. , Olsen J.V. , Blagoev B.
Sci. Signal.4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]

"A high-throughput FRET-based assay for determination of Atg4 activity."
Li M. , Chen X. , Ye Q.Z. , Vogt A. , Yin X.M.
Autophagy8:401-412(2012) [PubMed] [Europe PMC] [Abstract]

"Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features."
Bienvenut W.V. , Sumpton D. , Martinez A. , Lilla S. , Espagne C. , Meinnel T. , Giglione C.
Mol. Cell. Proteomics11:M111.015131-M111.015131(2012) [PubMed] [Europe PMC] [Abstract]

"N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB."
Van Damme P. , Lasa M. , Polevoda B. , Gazquez C. , Elosegui-Artola A. , Kim D.S. , De Juan-Pardo E. , Demeyer K. , Hole K. , Larrea E. , Timmerman E. , Prieto J. , Arnesen T. , Sherman F. , Gevaert K. , Aldabe R.
Proc. Natl. Acad. Sci. U.S.A.109:12449-12454(2012) [PubMed] [Europe PMC] [Abstract]

"Structural basis for the specificity and catalysis of human Atg4B responsible for mammalian autophagy."
Sugawara K. , Suzuki N.N. , Fujioka Y. , Mizushima N. , Ohsumi Y. , Inagaki F.
J. Biol. Chem.280:40058-40065(2005) [PubMed] [Europe PMC] [Abstract]

"The crystal structure of human Atg4b, a processing and de-conjugating enzyme for autophagosome-forming modifiers."
Kumanomidou T. , Mizushima T. , Komatsu M. , Suzuki A. , Tanida I. , Sou Y.-S. , Ueno T. , Kominami E. , Tanaka K. , Yamane T.
J. Mol. Biol.355:612-618(2006) [PubMed] [Europe PMC] [Abstract]

"The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy."
Satoo K. , Noda N.N. , Kumeta H. , Fujioka Y. , Mizushima N. , Ohsumi Y. , Inagaki F.
EMBO J.28:1341-1350(2009) [PubMed] [Europe PMC] [Abstract]