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Index > Protein center > EXOSC3(Gene name) > Human
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  • EXOSC3 (Gene name),
  • Exosome complex component RRP40 (Protein name ),  EXOS3_HUMAN from NCBI database.
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  • General Annotation
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  • Gene name:
    EXOSC3(CGI-102;RRP40);
    Protein name:
    Exosome complex component RRP40;
    Alternative:
    Ribosomal RNA-processing protein 40;Exosome component 3;p10;
    Organism:
    Human (Homo sapiens). 
    General Annotation
    Sub Unit:
    Component of the RNA exosome complex. Specifically part of the catalytically inactive RNA exosome core (Exo-9) complex which is believed to associate with catalytic subunits EXOSC10, and DIS3 or DIS3L in cytoplasmic- and nuclear-specific RNA exosome complex forms. Exo-9 is formed by a hexameric ring of RNase PH domain-containing subunits specifically containing the heterodimers EXOSC4-EXOSC9, EXOSC5-EXOSC8 and EXOSC6-EXOSC7, and peripheral S1 domain-containing components EXOSC1, EXOSC2 and EXOSC3 located on the top of the ring structure. Interacts with GTPBP1.
    Function:
    Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as anti-sense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. EXOSC3 as peripheral part of the Exo-9 complex stabilizes the hexameric ring of RNase PH-domain subunits through contacts with EXOSC9 and EXOSC5.
    Subcellular Location:
    Cytoplasm Nucleus nucleolus Nucleus
    Protein Attributes:
    Sequence length:
    275
    Sequence:
    50:
    MAEPASVAAE | SLAGSRARAA | RTVLGQVVLP | GEELLLPEQE | DAEGPGGAVE | 
    100:
    RPLSLNARAC | SRVRVVCGPG | LRRCGDRLLV | TKCGRLRHKE | PGSGSGGGVY | 
    150:
    WVDSQQKRYV | PVKGDHVIGI | VTAKSGDIFK | VDVGGSEPAS | LSYLSFEGAT | 
    200:
    KRNRPNVQVG | DLIYGQFVVA | NKDMEPEMVC | IDSCGRANGM | GVIGQDGLLF | 
    250:
    KVTLGLIRKL | LAPDCEIIQE | VGKLYPLEIV | FGMNGRIWVK | AKTIQQTLIL | 
    275:
    ANILEACEHM | TSDQRKQIFS | RLAES
    3D Structure:
    N/A
    Predicted Eptitope:
    Please Sign in.
    EIAab Sequence  Vaild Sequence:
    Please Sign in.
    Related Databases
    SMR:
    UniGene:
    String:
    KEGG:
    MIM:
    Uniprot:
     
    FOR
    ELISA Kit for Human Exosome complex component RRP40
    ELISA Kit for Human Exosome complex component RRP40
    ELISA Kit for Human Exosome complex component RRP40
    CLIA Kit for Human Exosome complex component RRP40
    CLIA Kit for Human Exosome complex component RRP40
    CLIA Kit for Human Exosome complex component RRP40
    Polyclonal Antibody for Human Exosome complex component RRP40
    Polyclonal Antibody for Human Exosome complex component RRP40
    Polyclonal Antibody for Human Exosome complex component RRP40
    Monoclonal Antibody for Human Exosome complex component RRP40
    Monoclonal Antibody for Human Exosome complex component RRP40
    Monoclonal Antibody for Human Exosome complex component RRP40
    Protein for Human Exosome complex component RRP40
    Protein for Human Exosome complex component RRP40
    Protein for Human Exosome complex component RRP40

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    References
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    6. 6.
      Bienvenut W.V.
      Submitted (2005-08) to the UniProtKB
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    7. 7.
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    8. 8.
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      Cell107:451-464(2001) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: IDENTIFICATION BY MASS SPECTROMETRY;IDENTIFICATION IN THE RNA EXOSOME CORE COMPLEX
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      "The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements."
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      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: FUNCTION IN CYTOPLASMIC MRNA DEGRADATION
    11. 11.
      "Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways."
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      Proc. Natl. Acad. Sci. U.S.A.105:4352-4357(2008) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH DDX17
    13. 13.
      "RNA exosome depletion reveals transcription upstream of active human promoters."
      Preker P. , Nielsen J. , Kammler S. , Lykke-Andersen S. , Christensen M.S. , Mapendano C.K. , Schierup M.H. , Jensen T.H.
      Science322:1851-1854(2008) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: FUNCTION IN PROMPT DEGRADATION
    14. 14.
      "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
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      Anal. Chem.81:4493-4501(2009) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2;IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]
    15. 15.
      "Dis3-like 1: a novel exoribonuclease associated with the human exosome."
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      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: IDENTIFICATION IN THE RNA EXOSOME COMPLEX;IDENTIFICATION BY MASS SPECTROMETRY;SUBCELLULAR LOCATION;INTERACTION WITH DIS3L
    16. 16.
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]
    17. 17.
      "The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates."
      Basu U. , Meng F.L. , Keim C. , Grinstein V. , Pefanis E. , Eccleston J. , Zhang T. , Myers D. , Wasserman C.R. , Wesemann D.R. , Januszyk K. , Gregory R.I. , Deng H. , Lima C.D. , Alt F.W.
      Cell144:353-363(2011) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: FUNCTION IN DEAMINATION OF TRANSCRIBED DNA SUBSTRATE
    18. 18.
      "Modulation of exosome-mediated mRNA turnover by interaction of GTP-binding protein 1 (GTPBP1) with its target mRNAs."
      Woo K.C. , Kim T.D. , Lee K.H. , Kim D.Y. , Kim S. , Lee H.R. , Kang H.J. , Chung S.J. , Senju S. , Nishimura Y. , Kim K.T.
      FASEB J.25:2757-2769(2011) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH GTPBP1
    19. 19.
      "Zinc-finger antiviral protein inhibits HIV-1 infection by selectively targeting multiply spliced viral mRNAs for degradation."
      Zhu Y. , Chen G. , Lv F. , Wang X. , Ji X. , Xu Y. , Sun J. , Wu L. , Zheng Y.T. , Gao G.
      Proc. Natl. Acad. Sci. U.S.A.108:15834-15839(2011) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH ZC3HAV1
    20. 20.
      "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features."
      Bienvenut W.V. , Sumpton D. , Martinez A. , Lilla S. , Espagne C. , Meinnel T. , Giglione C.
      Mol. Cell. Proteomics11:M111.015131-M111.015131(2012) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2;IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]
    21. 21.
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2;IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]
    22. 22.
      "Reconstitution, activities, and structure of the eukaryotic RNA exosome."
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      Cell127:1223-1237(2006) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: X-RAY CRYSTALLOGRAPHY (3.35 ANGSTROMS);RECONSTITUTION OF THE RNA EXOSOME CORE COMPLEX
    23. 23.
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: ERRATUM
    24. 24.
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: VARIANTS PCH1B ALA-31; ALA-132; PRO-139 AND ARG-238
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