Gene name:
Whrn (Kiaa1526;Whrn) ;
Protein name:
Whirlin ;
Alternative:
Organism:
Mouse (Mus musculus).
General Annotation
Sub Unit:
Forms homooligomers. Binds CASK, MPP1/p55 and MYO15A via the C-terminal PDZ domain. Binding to MYO15A is necessary for localization of WHRN to stereocilia tips. Interacts with USH2A, GPR98/MASS1 and LRRC4C/NGL1.
Function:
Necessary for elongation and maintenance of inner and outer hair cell stereocilia in the organ of Corti in the inner ear.
Subcellular Location:
Cytoplasm
Cell projection
stereocilium
Cell projection
growth cone
Detected at the level of stereocilia in inner and outer hair cells of the cochlea and vestibule. Co-localizes with the growing ends of actin filaments. Colocalizes with MPP1 in the retina, at the outer limiting membrane (OLM), outer plexifirm layer (OPL), basal bodies and at the connecting cilium.
Protein Attributes:
50:
MNAQLDGLSV | SSSSTGSLGS | AAAAAGGGGG | AGLRLLSANV | RQLHQALTAL |
100:
LSEPEREQFT | HCLNAYHARR | NVFDLVRTLR | VLLDSPVKRR | LLPMLRLVIP |
150:
RSDQLLFDQY | TAEGLYLPAT | TPYRQPAWAA | PDGAGPGEVR | LVSLRRAKAH |
200:
EGLGFSIRGG | SEHGVGIYVS | LVEPGSLAEK | EGLRVGDQIL | RVNDKSLARV |
250:
THAEAVKALK | GSKKLVLSVY | SAGRIPGGYV | TNHIYTWVDP | QGRSTSPPSS |
300:
LPQPHGSTLR | QREDDRRSTL | HLLQSGDEKK | VNLVLGDGRS | LGLTIRGGAE |
350:
YGLGIYITGV | DPGSEAESSG | LKVGDQILEV | NGRSFLNILH | DEAVKLLKSS |
400:
RHLILTVKDV | GRLPHARTTV | DQTKWIASSR | IGESVANSAG | FPGDHTEEGT |
450:
SKPGFYKGPA | GSQVTLSSLG | NQTRALLDDQ | ARHLLTEQER | ATMMYYLAQY |
500:
RGGTISVEAM | VMALFELLNT | HAKFSLLSEV | RSIISPQDLD | RFDHLVLRRE |
550:
IESMKARQPP | GPGVGDTYSM | VSYSDTGSST | GSHGTSTTVS | SARERLLWLI |
600:
DLMENTLDLE | GTGETTQGST | NALPDVSVDD | VKSPSEDLPG | IKPPPPPPPL |
650:
AQGHDRLLGQ | PRKPGREDPA | PLSSAAHSGI | VFSAPRNRSP | PPGTAPTPGP |
700:
SSAQDSPSSP | IYASISHANP | SSRKPLDTHL | ALVNQHPIGP | FPRVQSPPHL |
750:
KSPPAETPGA | GACLPPPSPS | EHPDAVGANQ | HFVLVEVHRP | DSEPDVNEVR |
800:
ALPQTRTAST | LSQLSDSGQT | LSEDSGVDAG | ETEASTSGRG | RQTASAKNKN |
850:
GKEQPRTERT | AEGANKPPGL | LEPTSTLVRV | RKSAATLGIA | IEGGANTRQP |
900:
LPRIVTIQRG | GSAHNCGQLK | VGHVILEVNG | QTLRGKEHKE | AARIIAEAFK |
918:
TKERDYIDFL | VTEFNVML
Vaild Sequence:
Related Databases
Uniprot:
ELISA Kit
CLIA Kit
Polyclonal Antibody
Monoclonal Antibody
Protein
FOR
Human
Mouse
Rat
ELISA Kit for Mouse Whirlin
ELISA Kit for Mouse Whirlin
ELISA Kit for Mouse Whirlin
CLIA Kit for Mouse Whirlin
CLIA Kit for Mouse Whirlin
CLIA Kit for Mouse Whirlin
Polyclonal Antibody for Mouse Whirlin
Polyclonal Antibody for Mouse Whirlin
Polyclonal Antibody for Mouse Whirlin
Monoclonal Antibody for Mouse Whirlin
Monoclonal Antibody for Mouse Whirlin
Monoclonal Antibody for Mouse Whirlin
Protein for Mouse Whirlin
Protein for Mouse Whirlin
Protein for Mouse Whirlin
R&D Technical Data
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Precision
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Recovery
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Linearity
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References
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[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2; 3; 4; 5; 6; 7; 8 AND 9);INTERACTION WITH MYO15A;SUBCELLULAR LOCATION
strain :
C57BL/6 .
tissue :
Inner ear .
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[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 11 AND 12);INTERACTION WITH RPGR;TISSUE SPECIFICITY
strain :
C57BL/6 .
tissue :
Retina .
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Europe PMC ]
[
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[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 10)
strain :
C57BL/6J .
tissue :
Inner ear .
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PLoS Biol.7:E1000112-E1000112(2009)
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Europe PMC ]
[
Abstract ]
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]
strain :
C57BL/6J .
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[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
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tissue :
Brain .
6.
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : DISEASE
7.
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Nat. Genet.34:421-428(2003)
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PubMed ]
[
Europe PMC ]
[
Abstract ]
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : DISEASE;ALTERNATIVE SPLICING;TISSUE SPECIFICITY
8.
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : FUNCTION;SUBCELLULAR LOCATION;TISSUE SPECIFICITY;DEVELOPMENTAL STAGE
9.
"Myosin XVa and whirlin, two deafness gene products required for hair bundle growth, are located at the stereocilia tips and interact directly."
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Hum. Mol. Genet.14:401-410(2005)
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PubMed ]
[
Europe PMC ]
[
Abstract ]
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : SUBUNIT;INTERACTION WITH LRRC4C; MYO7A AND MYO15A;SUBCELLULAR LOCATION
10.
"Usherin, the defective protein in Usher syndrome type IIA, is likely to be a component of interstereocilia ankle links in the inner ear sensory cells."
Adato A.
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Lefevre G.
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Delprat B.
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Michel V.
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Petit C.
Hum. Mol. Genet.14:3921-3932(2005)
[
PubMed ]
[
Europe PMC ]
[
Abstract ]
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : INTERACTION WITH USH2A
11.
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : INTERACTION WITH MPP1
12.
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : DISEASE
13.
"MPP1 links the Usher protein network and the Crumbs protein complex in the retina."
Gosens I.
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Hum. Mol. Genet.16:1993-2003(2007)
[
PubMed ]
[
Europe PMC ]
[
Abstract ]
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : INTERACTION WITH MPP1;SUBCELLULAR LOCATION
14.
[15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s)
Cited for : INTERACTION WITH EPS8