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Index > Protein center > Whrn(Gene name) > Mouse
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  • Whrn (Gene name),
  • Whirlin (Protein name ),  WHRN_MOUSE from NCBI database.
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  • General Annotation
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  • Antigen Annotation
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  • Predicted Eptitope
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  • Vaild Sequence
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  • Gene name:
    Whrn(Kiaa1526;Whrn);
    Protein name:
    Whirlin;
    Alternative:

    Organism:
    Mouse (Mus musculus). 
    General Annotation
    Sub Unit:
    Forms homooligomers. Binds CASK, MPP1/p55 and MYO15A via the C-terminal PDZ domain. Binding to MYO15A is necessary for localization of WHRN to stereocilia tips. Interacts with USH2A, GPR98/MASS1 and LRRC4C/NGL1.
    Function:
    Necessary for elongation and maintenance of inner and outer hair cell stereocilia in the organ of Corti in the inner ear.
    Subcellular Location:
    Cytoplasm Cell projection stereocilium Cell projection growth cone Detected at the level of stereocilia in inner and outer hair cells of the cochlea and vestibule. Co-localizes with the growing ends of actin filaments. Colocalizes with MPP1 in the retina, at the outer limiting membrane (OLM), outer plexifirm layer (OPL), basal bodies and at the connecting cilium.
    Protein Attributes:
    Sequence length:
    918
    Sequence:
    50:
    MNAQLDGLSV | SSSSTGSLGS | AAAAAGGGGG | AGLRLLSANV | RQLHQALTAL | 
    100:
    LSEPEREQFT | HCLNAYHARR | NVFDLVRTLR | VLLDSPVKRR | LLPMLRLVIP | 
    150:
    RSDQLLFDQY | TAEGLYLPAT | TPYRQPAWAA | PDGAGPGEVR | LVSLRRAKAH | 
    200:
    EGLGFSIRGG | SEHGVGIYVS | LVEPGSLAEK | EGLRVGDQIL | RVNDKSLARV | 
    250:
    THAEAVKALK | GSKKLVLSVY | SAGRIPGGYV | TNHIYTWVDP | QGRSTSPPSS | 
    300:
    LPQPHGSTLR | QREDDRRSTL | HLLQSGDEKK | VNLVLGDGRS | LGLTIRGGAE | 
    350:
    YGLGIYITGV | DPGSEAESSG | LKVGDQILEV | NGRSFLNILH | DEAVKLLKSS | 
    400:
    RHLILTVKDV | GRLPHARTTV | DQTKWIASSR | IGESVANSAG | FPGDHTEEGT | 
    450:
    SKPGFYKGPA | GSQVTLSSLG | NQTRALLDDQ | ARHLLTEQER | ATMMYYLAQY | 
    500:
    RGGTISVEAM | VMALFELLNT | HAKFSLLSEV | RSIISPQDLD | RFDHLVLRRE | 
    550:
    IESMKARQPP | GPGVGDTYSM | VSYSDTGSST | GSHGTSTTVS | SARERLLWLI | 
    600:
    DLMENTLDLE | GTGETTQGST | NALPDVSVDD | VKSPSEDLPG | IKPPPPPPPL | 
    650:
    AQGHDRLLGQ | PRKPGREDPA | PLSSAAHSGI | VFSAPRNRSP | PPGTAPTPGP | 
    700:
    SSAQDSPSSP | IYASISHANP | SSRKPLDTHL | ALVNQHPIGP | FPRVQSPPHL | 
    750:
    KSPPAETPGA | GACLPPPSPS | EHPDAVGANQ | HFVLVEVHRP | DSEPDVNEVR | 
    800:
    ALPQTRTAST | LSQLSDSGQT | LSEDSGVDAG | ETEASTSGRG | RQTASAKNKN | 
    850:
    GKEQPRTERT | AEGANKPPGL | LEPTSTLVRV | RKSAATLGIA | IEGGANTRQP | 
    900:
    LPRIVTIQRG | GSAHNCGQLK | VGHVILEVNG | QTLRGKEHKE | AARIIAEAFK | 
    918:
    TKERDYIDFL | VTEFNVML
    3D Structure:
    N/A
    Predicted Eptitope:
    Please Sign in.
    EIAab Sequence  Vaild Sequence:
    Please Sign in.
    Related Databases
    KEGG:
    UniGene:
    SMR:
    Pfam:
    String:
    Uniprot:
     
    FOR
    ELISA Kit for Mouse Whirlin
    ELISA Kit for Mouse Whirlin
    ELISA Kit for Mouse Whirlin
    CLIA Kit for Mouse Whirlin
    CLIA Kit for Mouse Whirlin
    CLIA Kit for Mouse Whirlin
    Polyclonal Antibody for Mouse Whirlin
    Polyclonal Antibody for Mouse Whirlin
    Polyclonal Antibody for Mouse Whirlin
    Monoclonal Antibody for Mouse Whirlin
    Monoclonal Antibody for Mouse Whirlin
    Monoclonal Antibody for Mouse Whirlin
    Protein for Mouse Whirlin
    Protein for Mouse Whirlin
    Protein for Mouse Whirlin

    R&D Technical Data
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    Precision
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    Recovery
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    Linearity
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    References
    1. 1.
      "Myosin-XVa is required for tip localization of whirlin and differential elongation of hair-cell stereocilia."
      Belyantseva I.A. , Boger E.T. , Naz S. , Frolenkov G.I. , Sellers J.R. , Ahmed Z.M. , Griffith A.J. , Friedman T.B.
      Nat. Cell Biol.7:148-156(2005) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2; 3; 4; 5; 6; 7; 8 AND 9);INTERACTION WITH MYO15A;SUBCELLULAR LOCATION
      strain: C57BL/6.
      tissue: Inner ear.
    2. 2.
      "RpgrORF15 connects to the usher protein network through direct interactions with multiple whirlin isoforms."
      Wright R.N. , Hong D.H. , Perkins B.
      Invest. Ophthalmol. Vis. Sci.53:1519-1529(2012) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 11 AND 12);INTERACTION WITH RPGR;TISSUE SPECIFICITY
      strain: C57BL/6.
      tissue: Retina.
    3. 3.
      "The transcriptional landscape of the mammalian genome."
      Carninci P. , Kasukawa T. , Katayama S. , Gough J. , Frith M.C. , Maeda N. , Oyama R. , Ravasi T. , Lenhard B. , Wells C. , Kodzius R. , Shimokawa K. , Bajic V.B. , Brenner S.E. , Batalov S. , Forrest A.R. , Zavolan M. , Davis M.J. , more...
      Science309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 10)
      strain: C57BL/6J.
      tissue: Inner ear.
    4. 4.
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]
      strain: C57BL/6J.
    5. 5.
      "Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries."
      Okazaki N. , Kikuno R. , Ohara R. , Inamoto S. , Aizawa H. , Yuasa S. , Nakajima D. , Nagase T. , Ohara O. , Koga H.
      DNA Res.10:35-48(2003) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 38-918 (ISOFORM 4)
      tissue: Brain.
    6. 6.
      "Elongation of hair cell stereocilia is defective in the mouse mutant whirler."
      Holme R.H. , Kiernan B.W. , Brown S.D.M. , Steel K.P.
      J. Comp. Neurol.450:94-102(2002) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: DISEASE
    7. 7.
      "Defects in whirlin, a PDZ domain molecule involved in stereocilia elongation, cause deafness in the whirler mouse and families with DFNB31."
      Mburu P. , Mustapha M. , Varela A. , Weil D. , El-Amraoui A. , Holme R.H. , Rump A. , Hardisty R.E. , Blanchard S. , Coimbra R.S. , Perfettini I. , Parkinson N. , Mallon A.-M. , Glenister P. , Rogers M.J. , Paige A.J. , Moir L. , Clay J. , more...
      Nat. Genet.34:421-428(2003) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: DISEASE;ALTERNATIVE SPLICING;TISSUE SPECIFICITY
    8. 8.
      "Mutant analysis reveals whirlin as a dynamic organizer in the growing hair cell stereocilium."
      Kikkawa Y. , Mburu P. , Morse S. , Kominami R. , Townsend S. , Brown S.D.M.
      Hum. Mol. Genet.14:391-400(2005) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: FUNCTION;SUBCELLULAR LOCATION;TISSUE SPECIFICITY;DEVELOPMENTAL STAGE
    9. 9.
      "Myosin XVa and whirlin, two deafness gene products required for hair bundle growth, are located at the stereocilia tips and interact directly."
      Delprat B. , Michel V. , Goodyear R. , Yamasaki Y. , Michalski N. , El-Amraoui A. , Perfettini I. , Legrain P. , Richardson G. , Hardelin J.-P. , Petit C.
      Hum. Mol. Genet.14:401-410(2005) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: SUBUNIT;INTERACTION WITH LRRC4C; MYO7A AND MYO15A;SUBCELLULAR LOCATION
    10. 10.
      "Usherin, the defective protein in Usher syndrome type IIA, is likely to be a component of interstereocilia ankle links in the inner ear sensory cells."
      Adato A. , Lefevre G. , Delprat B. , Michel V. , Michalski N. , Chardenoux S. , Weil D. , El-Amraoui A. , Petit C.
      Hum. Mol. Genet.14:3921-3932(2005) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH USH2A
    11. 11.
      "Whirlin complexes with p55 at the stereocilia tip during hair cell development."
      Mburu P. , Kikkawa Y. , Townsend S. , Romero R. , Yonekawa H. , Brown S.D.
      Proc. Natl. Acad. Sci. U.S.A.103:10973-10978(2006) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH MPP1
    12. 12.
      "The deaf mouse mutant whirler suggests a role for whirlin in actin filament dynamics and stereocilia development."
      Mogensen M.M. , Rzadzinska A. , Steel K.P.
      Cell Motil. Cytoskeleton64:496-508(2007) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: DISEASE
    13. 13.
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH MPP1;SUBCELLULAR LOCATION
    14. 14.
      "Regulation of stereocilia length by myosin XVa and whirlin depends on the actin-regulatory protein Eps8."
      Manor U. , Disanza A. , Grati M. , Andrade L. , Lin H. , Di Fiore P.P. , Scita G. , Kachar B.
      Curr. Biol.21:167-172(2011) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH EPS8
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