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Index > Protein center > Ythdc1(Gene name) > Rat
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  • Ythdc1 (Gene name),
  • YTH domain-containing protein 1 (Protein name ),  YTDC1_RAT from NCBI database.
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  • General Annotation
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  • Antigen Annotation
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  • Vaild Sequence
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  • Gene name:
    Ythdc1(Yt521);
    Protein name:
    YTH domain-containing protein 1;
    Alternative:
    RA301-binding protein;Putative splicing factor YT521;
    Organism:
    Rat (Rattus norvegicus). 
    General Annotation
    Sub Unit:
    Interacts with EMD, KHDRBS1/SAM68, KHDRBS3, RBMX, TRA2B/SFRS10, SC35 and SF2.
    Function:
    May be part of a signal transduction pathway that influences splice site selection.
    Subcellular Location:
    Nucleus Localizes to a novel subnuclear structure, the YT bodies.
    Protein Attributes:
    Sequence length:
    738
    Sequence:
    50:
    MAADSREEKD | GELNVLDDIL | TEVPEQDDEL | YNPESEQDKN | EKKGSKRKSE | 
    100:
    RMESIDTKRQ | KPSIHSRQLI | SKPLSSSVSN | NKRIVSTKGK | SVTEYKNEEY | 
    150:
    QRSERNKRLD | ADRKIRLSSS | SSREPYKSQP | EKPCLRKRDS | ERRAKSPTPD | 
    200:
    GSERIGLEVD | RRASRSSQSS | KEEGNSEEYG | SDHETGSSAS | SEQGNNTENE | 
    250:
    EEGGEEDVEE | DEEVDEDGDD | DEEVDEDAEE | EEDEEEDEEE | EDEEEEEEEE | 
    300:
    EEYEQDERDQ | KEEGNDYDTR | SEASDSGSES | VSFTDGSVRS | GSGTDGSDEK | 
    350:
    KKERKRARGI | SPIVFDRSGS | SASESYAGSE | KKHEKLSSSV | RAVRKDQTSK | 
    400:
    LKSVLQDARF | FLIKSNNHEN | VSLAKAKGVW | STLPVNEKKL | NLAFRSARSV | 
    450:
    ILIFSVRESG | KFQGFARLSS | ESHHGGSPIH | WVLPAGMSAK | MLGGVFKIDW | 
    500:
    ICRRELPFTK | SAHLTNPWNE | HKPVKIGRDG | QEIELECGTQ | LCLLFPPDES | 
    550:
    IDLYQLIHKM | RHKRRMHSQP | RSRGRPSRRE | PVRDVGRRRP | EDYDIHNSRK | 
    600:
    KPRIDYPPEF | HQRPGYLKDP | RYQEVDSFTN | LIPNRRFSGV | RRDVFLNGSY | 
    650:
    NDYVREFHNM | GPPPPWQGMP | PYPGIEQPPH | HPYYQHHAPP | PQAHPPYSGH | 
    700:
    HPVPHEARYR | DKRVHDYDMR | VDDFLRRTQA | VVSGRRSRPR | ERDRERERDR | 
    738:
    PRDNRRDRER | DRGRDRERER | ERICDRDRDR | GERGRYRR
    3D Structure:
    N/A
    Predicted Eptitope:
    Please Sign in.
    EIAab Sequence  Vaild Sequence:
    Please Sign in.
    Related Databases
    UniGene:
    String:
    SMR:
    Pfam:
    Uniprot:
     
    FOR
    ELISA Kit for Rat YTH domain-containing protein 1
    ELISA Kit for Rat YTH domain-containing protein 1
    ELISA Kit for Rat YTH domain-containing protein 1
    CLIA Kit for Rat YTH domain-containing protein 1
    CLIA Kit for Rat YTH domain-containing protein 1
    CLIA Kit for Rat YTH domain-containing protein 1
    Polyclonal Antibody for Rat YTH domain-containing protein 1
    Polyclonal Antibody for Rat YTH domain-containing protein 1
    Polyclonal Antibody for Rat YTH domain-containing protein 1
    Monoclonal Antibody for Rat YTH domain-containing protein 1
    Monoclonal Antibody for Rat YTH domain-containing protein 1
    Monoclonal Antibody for Rat YTH domain-containing protein 1
    Protein for Rat YTH domain-containing protein 1
    Protein for Rat YTH domain-containing protein 1
    Protein for Rat YTH domain-containing protein 1

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    Precision
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    Linearity
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    References
    1. 1.
      "Cloning of a gene, YT521, for a novel RNA splicing-related protein induced by hypoxia/reoxygenation."
      Imai Y. , Matsuo N. , Ogawa S. , Tohyama M. , Takagi T.
      Brain Res. Mol. Brain Res.53:33-40(1998) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2);FUNCTION
      tissue: Brain.
    2. 2.
      "The interaction and colocalization of Sam68 with the splicing-associated factor YT521-B in nuclear dots is regulated by the Src family kinase p59fyn."
      Hartmann A.M. , Nayler O. , Schwaiger F.W. , Obermeier A. , Stamm S.
      Mol. Biol. Cell10:3909-3926(1999) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1);FUNCTION
    3. 3.
      "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Gibbs R.A. , Weinstock G.M. , Metzker M.L. , Muzny D.M. , Sodergren E.J. , Scherer S. , Scott G. , Steffen D. , Worley K.C. , Burch P.E. , Okwuonu G. , Hines S. , Lewis L. , Deramo C. , Delgado O. , Dugan-Rocha S. , Miner G. , Morgan M. , more...
      Nature428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]
      strain: Brown Norway.
    4. 4.
      Mural R.J. , Adams M.D. , Myers E.W. , Smith H.O. , Venter J.C.
      Submitted (2005-07) to the EMBL/GenBank/DDBJ databases
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]
    5. 5.
      "The ER repeat protein YT521-B localizes to a novel subnuclear compartment."
      Nayler O. , Hartmann A.M. , Stamm S.
      J. Cell Biol.150:949-962(2000) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: SUBCELLULAR LOCATION
    6. 6.
      "The STAR/GSG family protein rSLM-2 regulates the selection of alternative splice sites."
      Stoss O. , Olbrich M. , Hartmann A.M. , Koenig H. , Memmott J. , Andreadis A. , Stamm S.
      J. Biol. Chem.276:8665-8673(2001) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH KHDRBS3
      tissue: Brain.
    7. 7.
      "Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA."
      Heinrich B. , Zhang Z. , Raitskin O. , Hiller M. , Benderska N. , Hartmann A.M. , Bracco L. , Elliott D. , Ben-Ari S. , Soreq H. , Sperling J. , Sperling R. , Stamm S.
      J. Biol. Chem.284:14303-14315(2009) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: INTERACTION WITH RBMX
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