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Index > Protein center > HLA-DRB5(Gene name) > Human
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  • HLA-DRB5 (Gene name),
  • HLA class II histocompatibility antigen, DR beta 5 chain (Protein name ),  DRB5_HUMAN from NCBI database.
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  • General Annotation
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  • Antigen Annotation
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  • Gene name:
    HLA-DRB5;
    Protein name:
    HLA class II histocompatibility antigen, DR beta 5 chain;
    Alternative:
    DR2-beta-2;DR beta-5;MHC class II antigen DRB5;Dw2;
    Organism:
    Human (Homo sapiens). 
    General Annotation
    Sub Unit:
    Heterodimer of an alpha and a beta subunit; also referred as MHC class II molecule. In the endoplasmic reticulum (ER) it forms an heterononamer; 3 MHC class II molecules bind to a CD74 homotrimer (also known as invariant chain or HLA class II histocompatibility antigen gamma chain). In the endosomal/lysosomal system; CD74 undergoes sequential degradation by various proteases; leaving a small fragment termed CLIP on each MHC class II molecule. MHC class II molecule interacts with HLA_DM, and HLA_DO in B cells, in order to release CLIP and facilitate the binding of antigenic peptides.
    Function:
    Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) and presents them on the cell surface for recognition by the CD4 T-cells. The peptide binding cleft accomodates peptides of 10-30 residues. The peptides presented by MHC class II molecules are generated mostly by degradation of proteins that access the endocytic route, where they are processed by lysosomal proteases and other hydrolases. Exogenous antigens that have been endocytosed by the APC are thus readily available for presentation via MHC II molecules, and for this reason this antigen presentation pathway is usually referred to as exogenous. As membrane proteins on their way to degradation in lysosomes as part of their normal turn-over are also contained in the endosomal/lysosomal compartments, exogenous antigens must compete with those derived from endogenous components. Autophagy is also a source of endogenous peptides, autophagosomes constitutively fuse with MHC class II loading compartments. In addition to APCs, other cells of the gastrointestinal tract, such as epithelial cells, express MHC class II molecules and CD74 and act as APCs, which is an unusual trait of the GI tract. To produce a MHC class II molecule that presents an antigen, three MHC class II molecules (heterodimers of an alpha and a beta chain) associate with a CD74 trimer in the ER to form an heterononamer. Soon after the entry of this complex into the endosomal/lysosomal system where antigen processing occurs, CD74 undergoes a sequential degradation by various proteases, including CTSS and CTSL, leaving a small fragment termed CLIP (class-II-associated invariant chain peptide). The removal of CLIP is facilitated by HLA-DM via direct binding to the alpha-beta-CLIP complex so that CLIP is released. HLA-DM stabilizes MHC class II molecules until primary high affinity antigenic peptides are bound. The MHC II molecule bound to a peptide is then transported to the cell membrane surface. In B cells, the interaction between HLA-DM and MHC class II molecules is regulated by HLA-DO. Primary dendritic cells (DCs) also to express HLA-DO. Lysosomal miroenvironment has been implicated in the regulation of antigen loading into MHC II molecules, increased acidification produces increased proteolysis and efficient peptide loading.
    Subcellular Location:
    Cell membrane Single-pass type I membrane protein Endoplasmic reticulum membrane Single-pass type I membrane protein Golgi apparatus trans-Golgi network membrane Single-pass type I membrane protein Endosome membrane Single-pass type I membrane protein Lysosome membrane Single-pass type I membrane protein Late endosome membrane Single-pass type I membrane protein The MHC class II complex transits through a number of intracellular compartments in the endocytic pathway until it reaches the cell membrane for antigen presentation.
    Protein Attributes:
    Sequence length:
    266
    Sequence:
    50:
    MVCLKLPGGS | YMAKLTVTLM | VLSSPLALAG | DTRPRFLQQD | KYECHFFNGT | 
    100:
    ERVRFLHRDI | YNQEEDLRFD | SDVGEYRAVT | ELGRPDAEYW | NSQKDFLEDR | 
    150:
    RAAVDTYCRH | NYGVGESFTV | QRRVEPKVTV | YPARTQTLQH | HNLLVCSVNG | 
    200:
    FYPGSIEVRW | FRNSQEEKAG | VVSTGLIQNG | DWTFQTLVML | ETVPRSGEVY | 
    250:
    TCQVEHPSVT | SPLTVEWRAQ | SESAQSKMLS | GVGGFVLGLL | FLGAGLFIYF | 
    266:
    KNQKGHSGLH | PTGLVS
    3D Structure:
    N/A
    Predicted Eptitope:
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    EIAab Sequence  Vaild Sequence:
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    Related Databases
    Pfam:
    UniGene:
    SMR:
    UniGene:
    MIM:
    String:
    KEGG:
    Uniprot:
     
    FOR
    ELISA Kit for Human HLA class II histocompatibility antigen, DR beta 5 chain
    Cat.:
    E15038h
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    Packing:
    96T
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    CLIA Kit for Human HLA class II histocompatibility antigen, DR beta 5 chain
    Cat.:
    U15038h
    Price:
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    MSDS:
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    Packing:
    96T
    Polyclonal Antibody for Human HLA class II histocompatibility antigen, DR beta 5 chain
    Monoclonal Antibody for Human HLA class II histocompatibility antigen, DR beta 5 chain
    Protein for Human HLA class II histocompatibility antigen, DR beta 5 chain

    R&D Technical Data
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    Precision
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    Recovery
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    Linearity
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    References
    1. 1.
      "Polymorphism of human Ia antigens generated by reciprocal intergenic exchange between two DR beta loci."
      Wu S. , Saunders T.L. , Bach F.H.
      Nature324:676-679(1986) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA];VARIANTS SER-28 AND ALA-154
    2. 2.
      "cDNA cloning and sequencing reveals that the electrophoretically constant DR beta 2 molecules, as well as the variable DR beta 1 molecules, from HLA-DR2 subtypes have different amino acid sequences including a hypervariable region for a functionally important epitope."
      Wu S.K. , Yabe T. , Madden M. , Saunders T.L. , Bach F.H.
      J. Immunol.138:2953-2959(1987) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA];VARIANT SER-28
    3. 3.
      "MHC class II sequences of an HLA-DR2 narcoleptic."
      Lock C.B. , So A.K. , Welsh K.I. , Parkes J.D. , Trowsdale J.
      Immunogenetics27:449-455(1988) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ALLELE DRB5*01:01)
    4. 4.
      "A novel DRB1 allele in DR2-positive American blacks."
      Demopulos J.T. , Hodge T.W. , Wooten V. , Acton R.T.
      Hum. Immunol.30:41-44(1991) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA];VARIANT SER-28
    5. 5.
      "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T. , Suzuki Y. , Nishikawa T. , Otsuki T. , Sugiyama T. , Irie R. , Wakamatsu A. , Hayashi K. , Sato H. , Nagai K. , Kimura K. , Makita H. , Sekine M. , Obayashi M. , Nishi T. , Shibahara T. , Tanaka T. , Ishii S. , more...
      Nat. Genet.36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ALLELE DRB5*01:01)
      tissue: Stomach.
    6. 6.
      "The DNA sequence and analysis of human chromosome 6."
      Mungall A.J. , Palmer S.A. , Sims S.K. , Edwards C.A. , Ashurst J.L. , Wilming L. , Jones M.C. , Horton R. , Hunt S.E. , Scott C.E. , Gilbert J.G.R. , Clamp M.E. , Bethel G. , Milne S. , Ainscough R. , Almeida J.P. , Ambrose K.D. , Andrews T.D. , more...
      Nature425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (ALLELE DRB5*01:01)
    7. 7.
      "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res.14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ALLELE DRB5*01:01)
      tissue: B-cell.
    8. 8.
      "Diversity associated with the second expressed HLA-DRB locus in the human population."
      Robbins F. , Hurley C.K. , Tang T. , Yao H. , Lin Y.S. , Wade J. , Goeken N. , Hartzman R.J.
      Immunogenetics46:104-110(1997) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 28-140 (ALLELE DRB5*01:04);NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-119 (ALLELE DRB5*02:04)
      tissue: Blood.
    9. 9.
      "HLA-DR2 subtypes form an additional supertypic family of DR beta alleles."
      Lee B.S.M. , Rust N.A. , McMichael A.J. , McDevitt H.O.
      Proc. Natl. Acad. Sci. U.S.A.84:4591-4595(1987) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 30-266 (ALLELES DRB5*01:01 AND DRB5*01:02)
    10. 10.
      "Allelic variation in the DR subregion of the human major histocompatibility complex."
      Bell J.I. , Denney D. Jr. , Foster L. , Belt T.K. , Todd J.A. , McDevitt H.O.
      Proc. Natl. Acad. Sci. U.S.A.84:6234-6238(1987) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 30-266;VARIANT ALA-154
    11. 11.
      "Primary structure of human class II histocompatibility antigens 3rd communication. Amino acid sequence comparison between DR and DC subclass antigens derived from a lymphoblastoid B cell line homozygous at the HLA loci (HLA-A3,3; B7,7; Dw2,2; DR2,2: MT1,1; Dc1,1: MB1,1)."
      Goetz H. , Kratzin H. , Thinnes F.P. , Yang C.-Y. , Kruse T. , Pauly E. , Koelbel S. , Egert G. , Wernet P. , Hilschmann N.
      Hoppe-Seyler's Z. Physiol. Chem.364:749-755(1983) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: PROTEIN SEQUENCE OF 30-148 AND 158-178
    12. 12.
      "Characterization of a new HLA-DRB5 allele (DRB5*0105) by PCR-SSP and direct sequencing."
      Poli F. , Bianchi P. , Crespiatico L. , Terragna C. , van den Berg-Loonen E. , Sirchia G.
      Tissue Antigens47:338-340(1996) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 34-122 (ALLELE DRB5*01:05)
    13. 13.
      "New sequences found during routine HLA typing."
      Anholts J.D.H.
      Submitted (2009-07) to the EMBL/GenBank/DDBJ databases
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-217 (ALLELE DRB5*01:14)
      tissue: Blood.
    14. 14.
      "Sequence of a new HLA-DR allele, DRB5*0106."
      Kervaire B. , Tiercy J.
      Eur. J. Immunogenet.24:225-228(1997) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-123 (ALLELE DRB5*01:06)
    15. 15.
      Hurley C.K.
      Submitted (1999-01) to the EMBL/GenBank/DDBJ databases
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-123 (ALLELE DRB5*01:03)
      tissue: Blood.
    16. 16.
      "Identification of a new DRB5*02 variant allele by PCR-SSP and SBT."
      Carter V. , Day S. , Dunn P.
      Submitted (2000-01) to the EMBL/GenBank/DDBJ databases
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-123 (ALLELE DRB5*02:05)
    17. 17.
      "Novel HLA-DRB5 allele found by sequence based typing."
      Greville W.D. , Chapman G. , Hogbin J.-P. , Velickovic Z.
      Submitted (2002-08) to the EMBL/GenBank/DDBJ databases
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-123 (ALLELE DRB5*01:11)
    18. 18.
      "Identification of a new HLA-DRB5 allele, DRB5*0112, by routine PCR-SSP."
      Atkinson D.C. , Jobson S.E. , Dunn P.P. , Briggs D.C.
      Tissue Antigens62:554-555(2003) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-123 (ALLELE DRB5*01:12)
    19. 19.
      "Identification of a new allele, HLA-DRB5*0113, through three different molecular biology techniques."
      Garino E. , Berrino M. , Bertinetto F. , Caropreso P. , Chidichimo R. , Dametto E. , Fasano M.E. , Frisaldi E. , Mazzola G. , Tondat F. , Boccadoro M. , Bruno B. , Amoroso A.
      Tissue Antigens67:427-429(2006) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-123 (ALLELE DRB5*01:13)
    20. 20.
      "Identification of novel DRB1*11 (DRB1*11013, DRB1*1129), DRB1*08 (DRB1*0816) and DRB5* (DRB5*0107) alleles."
      Buyse I.M. , Couture C. , Hashemi-Tavoularis S.
      Tissue Antigens50:678-681(1997) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-115 (ALLELE DRB5*01:07)
    21. 21.
      "Identification of novel DRB1*13 (DRB1*1333), DRB1*04 (DRB1*0426) and DRB5* (DRB5*0109) alleles."
      Buyse I.M. , Ouellet S. , Hashemi-Tavoularis S.
      Tissue Antigens51:658-662(1998) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 35-115 (ALLELE DRB5*01:09)
    22. 22.
      "DRB5*HK: a new HLA-DRB5 allele in Cantonese."
      Grooms A. , Dunckley H. , Gao X. , Serjeantson S.W.
      Tissue Antigens40:210-211(1992) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 36-119 (ALLELE DRB5*02:03)
    23. 23.
      "Invariant chain structure and MHC class II function."
      Cresswell P.
      Cell84:505-507(1996) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: REVIEW
    24. 24.
      "Presentation of antigens by MHC class II molecules: getting the most out of them."
      Villadangos J.A.
      Mol. Immunol.38:329-346(2001) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: REVIEW
    25. 25.
      "Autophagy in MHC class II presentation: sampling from within."
      Menendez-Benito V. , Neefjes J.
      Immunity26:1-3(2007) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: REVIEW
    26. 26.
      "MHC class II molecules on the move for successful antigen presentation."
      Rocha N. , Neefjes J.
      EMBO J.27:1-5(2008) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: REVIEW
    27. 27.
      "MHC class II stabilization at the surface of human dendritic cells is the result of maturation-dependent MARCH I down-regulation."
      De Gassart A. , Camosseto V. , Thibodeau J. , Ceppi M. , Catalan N. , Pierre P. , Gatti E.
      Proc. Natl. Acad. Sci. U.S.A.105:3491-3496(2008) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: UBIQUITINATION BY MARCH1;SUBCELLULAR LOCATION
    28. 28.
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      Berger A.C. , Roche P.A.
      J. Cell Sci.122:1-4(2009) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: REVIEW
    29. 29.
      "CD74 in antigen presentation, inflammation, and cancers of the gastrointestinal tract."
      Beswick E.J. , Reyes V.E.
      World J. Gastroenterol.15:2855-2861(2009) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: REVIEW
    30. 30.
      "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry."
      Chen R. , Jiang X. , Sun D. , Han G. , Wang F. , Ye M. , Wang L. , Zou H.
      J. Proteome Res.8:651-661(2009) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-48
      tissue: Liver.
    31. 31.
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]
    32. 32.
      "Structural basis for the binding of an immunodominant peptide from myelin basic protein in different registers by two HLA-DR2 proteins."
      Li Y. , Li H. , Martin R. , Mariuzza R.A.
      J. Mol. Biol.304:177-188(2000) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) OF 30-219 OF HLA-DRA/HLA-DRB5 HETERODIMER IN COMPLEX WITH MBP PEPTIDE;SUBUNIT;DISULFIDE BONDS
    33. 33.
      "Crystal structure of a superantigen bound to the high-affinity, zinc-dependent site on MHC class II."
      Li Y. , Li H. , Dimasi N. , McCormick J.K. , Martin R. , Schuck P. , Schlievert P.M. , Mariuzza R.A.
      Immunity14:93-104(2001) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS) OF 30-219 OF HLA-DRA/HLA-DRB5 HETERODIMER IN COMPLEX WITH MPB PEPTIDE AND STREPTOCOCCUS PYOGENES SPEC PEPTIDE;SUBUNIT;DISULFIDE BONDS
    34. 34.
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: X-RAY CRYSTALLOGRAPHY (3.1 ANGSTROMS) OF 30-219 OF HLA-DRA/HLA-DRB5 HETERODIMER IN COMPLEX EPSTEIN-BARR VIRUS BALF5 PEPTIDE;SUBUNIT;DISULFIDE BONDS
    35. 35.
      "Structure of a human autoimmune TCR bound to a myelin basic protein self-peptide and a multiple sclerosis-associated MHC class II molecule."
      Li Y. , Huang Y. , Lue J. , Quandt J.A. , Martin R. , Mariuzza R.A.
      EMBO J.24:2968-2979(2005) [PubMed] [Europe PMC] [Abstract]
      [15/1/25 17:38] Upload to ab completed in less than a minute: 1 file transferred (13.4 Kb/s) Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF 30-221 OF HLA-DRA/HLA-DRB5 HETERODIMER IN COMPLEX WITH MBP PEPTIDE AND TRAC;SUBUNIT;DISULFIDE BONDS
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